PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00777.1.g00120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 287aa    MW: 31220.5 Da    PI: 8.0163
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00777.1.g00120.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.81.1e-304106198
                          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 
                                     +C++C+vlr++C+++C+++p++     p++q +++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +Pvy
  Zmw_sc00777.1.g00120.1.sm.mkhc   4 SCNGCRVLRKGCSDNCAIRPCLqwirsPDAQGNATVFLAKFYGRAGLINLISAGPENVRPAIFRSLLYEACGRMLNPVY 82 
                                     6*************************99*************************************************** PP

                          DUF260  75 Gavgvilklqqqleqlkaelallk 98 
                                     G+vg+++++++ql+q+++e +l++
  Zmw_sc00777.1.g00120.1.sm.mkhc  83 GSVGLLWSGNWQLCQAAVENVLRG 106
                                     *****************9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381551.3E-891278IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.7283109IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDNCA IRPCLQWIRS PDAQGNATVF LAKFYGRAGL INLISAGPEN  60
VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQAAV ENVLRGMPIA QPPPAATAVP  120
PLKTCDIRHV ARRRGDDGGA AADIHGVAIS SRGQFKRRGA QRWPRSNTAI ELVFSRPSSA  180
MLVDVRQAQP LNWALAGKLN HEYYASHDDV PETDSNTSVD TVEVSHVSQS EPEAVIDTDG  240
HEVGLDLALG LLPAPHKIEP SQFDNDQHDQ RAEIVKIGFG IKAPIAR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643695.11e-135PREDICTED: LOB domain-containing protein 40
SwissprotQ9M8862e-71LBD41_ARATH; LOB domain-containing protein 41
TrEMBLJ3KW271e-135J3KW27_ORYBR; Uncharacterized protein
STRINGOB01G11830.11e-134(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127